User profiles for Sean Davis

Sean Davis

University of Colorado
Verified email at cuanschutz.edu
Cited by 39431

NCBI GEO: archive for functional genomics data sets—update

…, CL Robertson, N Serova, S Davis… - Nucleic acids …, 2012 - academic.oup.com
The Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/ ) is an international
public repository for high-throughput microarray and next-generation sequence functional …

Orchestrating high-throughput genomic analysis with Bioconductor

…, M Carlson, BS Carvalho, HC Bravo, S Davis… - Nature …, 2015 - nature.com
Bioconductor is an open-source, open-development software project for the analysis and
comprehension of high-throughput data in genomics and molecular biology. The project aims …

Novel hollow polymer shells by colloid‐templated assembly of polyelectrolytes

…, GB Sukhorukov, F Caruso, SA Davis… - Angewandte Chemie …, 1998 - Wiley Online Library
Exact control of the film thickness of polyelectrolyte shells (a transmission electron microscopy
image is shown) is achieved by colloid‐templated consecutive adsorption of polyanions …

GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor

S Davis, PS Meltzer - Bioinformatics, 2007 - academic.oup.com
Microarray technology has become a standard molecular biology tool. Experimental data
have been generated on a huge number of organisms, tissue types, treatment conditions and …

Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia

…, L Noory, P Gochman, R Long, Z Chen, S Davis… - science, 2008 - science.org
Schizophrenia is a devastating neurodevelopmental disorder whose genetic influences remain
elusive. We hypothesize that individually rare structural variants contribute to the illness. …

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

S Durinck, Y Moreau, A Kasprzyk, S Davis… - …, 2005 - academic.oup.com
biomaRt is a new Bioconductor package that integrates BioMart data resources with data
analysis software in Bioconductor. It can annotate a wide range of gene or gene product …

[HTML][HTML] High-resolution mapping and characterization of open chromatin across the genome

AP Boyle, S Davis, HP Shulha, P Meltzer, EH Margulies… - Cell, 2008 - cell.com
Mapping DNase I hypersensitive (HS) sites is an accurate method of identifying the location
of genetic regulatory elements, including promoters, enhancers, silencers, insulators, and …

Contributions of stratospheric water vapor to decadal changes in the rate of global warming

…, KH Rosenlof, RW Portmann, JS Daniel, SM Davis… - science, 2010 - science.org
Stratospheric water vapor concentrations decreased by about 10% after the year 2000. Here
we show that this acted to slow the rate of increase in global surface temperature over 2000…

Growth and form of gold nanorods prepared by seed-mediated, surfactant-directed synthesis

CJ Johnson, E Dujardin, SA Davis… - Journal of Materials …, 2002 - pubs.rsc.org
Gold nanorods were prepared via a seed-mediated sequential growth process involving the
use of citrate-stabilised seed crystals and their subsequent growth in a series of reaction …

Stepwise polyelectrolyte assembly on particle surfaces: a novel approach to colloid design

GB Sukhorukov, E Donath, S Davis… - Polymers for …, 1998 - Wiley Online Library
Polyelectrolyte multilayers were deposited onto polystyrene and melamine formaldehyde
latex particles by means of consecutive adsorption. Two different methods of multilayer growth …